Publications
192. Tian Sang, Chin-Wen Chen, Zhen Lin, Yu Ma, Yanyan Du, Pei-Yi Lin, Marco Hadisurya, Jian-Kang Zhu, Zhaobo Lang, W Andy Tao, Chuan-Chih Hsu, Pengcheng Wang (2024). DIA-based phosphoproteomics identifies early phosphorylation events in response to EGTA and mannitol in Arabidopsis. Mol Cell Proteomics, 23(8), 100804.
191. Hao Zhang, Wenjing Yan, Jinhui Wang, Shuqian Xie, W Andy Tao, Chien-Wei Lee, Xing Zhang, Guiyuan Zhang, Yufeng Liu, Dong Wei, Jing Hu, Haohan Liu, Fengying Liu, Yamei Nie, Xue Chen, Hongtao Xu, Jiang Xia, Shizhi Wang (2024). Surface functionalization of exosomes for chondrocyte-targeted siRNA delivery and cartilage regeneration. J Control Release, 369, 493–505.
190. Wenjing Yan, Ying Li, Shuqian Xie, W Andy Tao, Jing Hu, Haohan Liu, Guiyuan Zhang, Fengying Liu, Yamei Nie, Xue Chen, Xing Zhang, Yufeng Liu, Dong Wei, Changyan Ma, Hao Zhang, Hongtao Xu, Shizhi Wang (2024). Chondrocyte-Targeted Delivery System of Sortase A-Engineered Extracellular Vesicles Silencing MMP13 for Osteoarthritis Therapy. Adv. Healthc. Mater., e2303510.
189. Shannon A Stirling, Angelica M Guercio, Ryan M Patrick, Xing-Qi Huang, Matthew E Bergman, Varun Dwivedi, Ruy W J Kortbeek, Yi-Kai Liu, Fuai Sun, W Andy Tao, Ying Li, Benoît Boachon, Nitzan Shabek, Natalia Dudareva (2024). Volatile communication in plants relies on a KAI2-mediated signaling pathway. Science, 383(6689), 1318–1325.
188. Xiaofeng Wu, Menchus Quan, Marco Hadisurya, Jianzhong Hu, Yi-Kai Liu, Yuxin Zhuang, Li Li, Anton B Iliuk, Jun J Yang, Shihuan Kuang, W Andy Tao (2024). Monitoring drug metabolic pathways through extracellular vesicles in mouse plasma. PNAS nexus. 3(2), pgae023.
187. Dong Wei, Jie Sun, Zhuojun Luo, Guiyuan Zhang, Yufeng Liu, Hao Zhang, Zhuoying Xie, Zhongze Gu, W Andy Tao (2024). Targeted Phosphoproteomics of Human Saliva Extracellular Vesicles via Multiple Reaction Monitoring Cubed (MRM3). Analytical Chemistry. 96(3), 1223–1231.
186. Yi-Kai Liu, Zhuojun Luo, Anton Iliuk, Weiguo Andy Tao (2023). Chemical Affinity-Based Isolation of Extracellular Vesicles from Biofluids for Proteomics and Phosphoproteomics Analysis. JoVE. 200, e65844.
185. Zheng-Chi Lee, Marco Hadisurya, Zhuojun Luo, Li Li, W Andy Tao (2023). Hands-Free Proteomic Profiling of Urinary Extracellular Vesicles with a High-Throughput Automated Workflow. J Am Soc Mass Spectrom. 34(11):2585-2593.
184. Yi-Kai Liu, Xiaofeng Wu, Marco Hadisurya, Li Li, Hristos Kaimakliotis, Anton Iliuk, W. Andy Tao (2023). One-Pot Analytical Pipeline for Efficient and Sensitive Proteomic Analysis of Extracellular Vesicles. J Proteome Res. 22(10):3301-3310.
183. Jiamin Qiu, Feng Yue, Peipei Zhu, Jingjuan Chen, Fan Xu, Lijia Zhang, Kun Ho Kim, Madigan M. Snyder, Nanjian Luo, Hao-wei Xu, Fang Huang, W. Andy Tao, Shihuan Kuang (2023). FAM210A is essential for cold-induced mitochondrial remodeling in brown adipocytes. Nat. Commun. 14(1): 6344.
182. Yuanyuan Deng, Qing Li, Jie Sun, Leyao Ma, Yajie Ding, Yuhan Cai, Anton Iliuk, Bobin Chen, Zhuoying Xie, W Andy Tao (2023). Phosphoproteome analysis of cerebrospinal fluid extracellular vesicles in primary central nervous system lymphoma. The Analyst, 148(15), 3594–3602.
181. Xiaohui Li, Peipei Zhu, Yen-Ju Chen, Lei Huang, Diwen Wang, David T Newton, Chuan-Chih Hsu, Guang Lin, W Andy Tao, Christopher J Staiger, Chunhua Zhang (2023). The EXO70 inhibitor Endosidin2 alters plasma membrane protein composition in Arabidopsis roots. Front Plant Sci. 14:1171957.
180. Guochen Qin, Menghuan Qu, Bei Jia, Wei Wang, Zhuojun Luo, Chun-Peng Song, W Andy Tao, Pengcheng Wang (2023). FAT-switch-based quantitative S-nitrosoproteomics reveals a key role of GSNOR1 in regulating ER functions. Nat Commun. 14(1):3268.
179. Jie Sun, Qing Li, Yajie Ding, Dong Wei, Marco Hadisurya, Zhuojun Luo, Zhongze Gu, Bobin Chen, W. Andy Tao (2023). Profiling Phosphoproteome Landscape in Circulating Extracellular Vesicles from Microliters of Biofluids through Functionally Tunable Paramagnetic Separation. Angew. Chem. Int. Ed. 62(29), e202305668.
178. Jiajun Dong, Jinmin Miao, Yiming Miao, Zihan Qu, Sheng Zhang, Peipei Zhu, Florian Wiede, Brenson A Jassim, Yunpeng Bai, Quyen Nguyen, Jianping Lin, Lan Chen, Tony Tiganis, W Andy Tao, Zhong‐Yin Zhang (2023). Small Molecule Degraders of Protein Tyrosine Phosphatase 1B and T-Cell Protein Tyrosine Phosphatase for Cancer Immunotherapy. Angew. Chem. Int. Ed. 62(22), e202303818.
177. Michelle V. Lihon, Marco Hadisurya, Xiaofeng Wu, Anton Iliuk, W. Andy Tao (2023). Isolation and Identification of Plasma Extracellular Vesicles Protein Biomarkers. Cancer Systems and Integrative Biology. Methods in Molecular Biology, vol 2660.
176. Marco Hadisurya, Li Li, Kananart Kuwaranancharoen, Xiaofeng Wu, Zheng-Chi Lee, Roy N. Alcalay, Shalini Padmanabhan, W. Andy Tao, Anton Iliuk (2023). Quantitative proteomics and phosphoproteomics of urinary extracellular vesicles define putative diagnostic biosignatures for Parkinson’s disease. Commun. Med. 3: 64.
175. Xin Feng, Shengnan Jia, Muhammad Mujahid Ali, Guiyuan Zhang, Dejun Li, W Andy Tao, Lianghai Hu (2023). Proteomic Discovery and Array-Based Validation of Biomarkers from Urinary Exosome by Supramolecular Probe. J Proteome Res. 22(7):2516-2524.
174. Yunpeng Bai, Guimei Yu, Hong-Ming Zhou, Ovini Amarasinghe, Yuan Zhou, Peipei Zhu, Qinglin Li, Lujuan Zhang, Frederick Nguele Meke, Yiming Miao, Eli Chapman, W Andy Tao, Zhong-Yin Zhang (2023). PTP4A2 promotes lysophagy by dephosphorylation of VCP/p97 at Tyr805. Autophagy. 19(5), 1562–1581.
173. Juntao Zhou, Xianhui Cheng, Zhanchen Guo, Muhammad Mujahid Ali, Guiyuan Zhang, W Andy Tao, Lianghai Hu, Zhen Liu (2023). Epitope Imprinting of Phospholipids by Oriented Assembly at the Oil/Water Interface for the Selective Recognition of Plasma Membranes. Angew Chem Int Ed Engl. 62(19):e202213938.
172. Xiaofeng Wu, Yi-Kai Liu, Anton B. Iliuk, W. Andy Tao (2023). Mass spectrometry-based phosphoproteomics in clinical applications. TrAC, Trends Anal. Chem. 163: 117066.
171. Marco Hadisurya, Zheng-Chi Lee, Zhuojun Luo, Guiyuan Zhang, Yajie Ding, Hao Zhang, Anton B. Iliuk, Roberto Pili, Ronald S. Boris, W. Andy Tao (2023). Data-Independent Acquisition Phosphoproteomics of Urinary Extracellular Vesicles Enables Renal Cell Carcinoma Grade Differentiation. Mol Cell Proteomics. 22(5): 100536.
170. Xiaofeng Wu, Anton B Iliuk, W Andy Tao (2023). Translational proteomics and phosphoproteomics: Tissue to extracellular vesicles. Adv. Clin. Chem. 112: 119-153.
169. Xin Feng, Anton Iliuk, Xiaoye Zhang, Shengnan Jia, Ao Shen, Wenke Zhang, Lianghai Hu, W Andy Tao (2023). Supramolecular Exosome Array for Efficient Capture and In Situ Detection of Protein Biomarkers. Anal Chem. 95(5):2812-2821.
168. Jie Sun, Xiaole Wang, Yajie Ding, Bolin Xiao, Xinxin Wang, Muhammad Mujahid Ali, Leyao Ma, Zhuoying Xie, Zhongze Gu, Gang Chen, W Andy Tao (2023). Proteomic and phosphoproteomic landscape of salivary extracellular vesicles to assess OSCC therapeutical outcomes. Proteomics. 23(5):e2200319.
167. Sijie Wang, Marco Hadisurya, W. Andy Tao, Emily Dykhuizen, Casey Krusemark (2023). Covalent Protein Inhibitors via Tyrosine Conjugation with Cyclic Imine Mannich Electrophiles. ChemRxiv.
166. Der-Shyang Kao, Yanyan Du, Andrew G. DeMarco, Sehong Min, Mark C. Hall, JeanChristophe Rochet, W. Andy Tao (2022). Identification of novel kinases of Tau using fluorescence complementation mass spectrometry (FCMS). Mol Cell Proteomics. 21(12): 100441.
165. Peipei Zhu, Xiaofeng Wu, Ruo-Yu Zhang, Chuan-Chih Hsu, Zhong-Yin Zhang, W. Andy Tao (2022). An Integrated Proteomic Strategy to Identify SHP2 Substrates. J Proteome Res.
164. Harrys Kishore Charles Jacob, Rossana Signorelli, Teresa Maidana Giret, Oliver Umland, Marco Hadisurya, Shweta Lavania, Charles Richard John Lalith, Ashley Nicole Middleton, Belinda Minucci Boone, Ayse Burcu Ergonul, Weiguo Andy Tao, Haleh Amirian, Anton Iliuk, Aliya Mahmood Khan, Robert Alexander Diaz, Daniel Bilbao Cortes, Monica Tulia Garcia-Buitrago (2022). ALCAM: A Novel Surface Marker on EpCAMlow Circulating Tumor Cells. Biomedicines. 10(8): 1983.
163. Xiaofeng Wu, W Andy Tao (2022). Uncovering ubiquitous protein lactylation. Nature Methods. 1-2.
162. Carlos Salomon, Saumya Das, Uta Erdbrügger, Raghu Kalluri, Sai Kiang Lim, Jerrold M Olefsky, Gregory E Rice, Susmita Sahoo, W Andy Tao, Pieter Vader, Qun Wang, Alissa M Weaver (2022). Extracellular Vesicles and Their Emerging Roles as Cellular Messengers in Endocrinology: An Endocrine Society Scientific Statement. Endocrine Reviews. 43(3): 441–468.
161. Yanyan Du, Shaojun Xie, Yubei Wang, Yu Ma, Bei Jia, Xue Liu, Jingkai Rong, Rongxia Li, Xiaohong Zhu, Chun-Peng Song, W Andy Tao, Pengcheng Wang (2022). Low molecular weight protein phosphatase APH mediates tyrosine dephosphorylation and ABA response in Arabidopsis. Stress Biology. 1-12.
160. Harrys Kishore Charles Jacob, Rossana Signorelli, John Lalith Charles Richard, Tyler Kashuv, Shweta Lavania, Ashley Middleton, Beatriz Aguilar Gomez, Anthony Ferrantella, Haleh Amirian, Junyi Tao, Aysha Burcu Ergonul, Melinda Minucci Boone, Marco Hadisurya, Weiguo Andy Tao, Anton Iluik, Monica Garcia-Buitrago, Rajinder Dawra, Ashok Kumar Saluja (2022). Identification of novel early pancreatic cancer biomarkers KIF5B and SFRP2 from “first contact” interactions in the tumor microenvironment. J. Exp. Clin. Cancer Res. 41: 258
159. Pei Jiang, Xiangyu Ma, Shanying Han, Leyao Ma, Jingru Ai, Leilei Wu, Yuan Zhang, Hairong Xiao, Mengyao Tian, W Andy Tao, Shasha Zhang, Renjie Chai (2022). Characterization of the microRNA transcriptomes and proteomics of cochlear tissue-derived small extracellular vesicles from mice of different ages after birth. Cellular and Molecular Life Sciences. 79(3): 1-23.
158. Marco Hadisurya, Li Li, Kananart Kuwaranancharoen, Xiaofeng Wu, Zheng-Chi Lee, Roy N Alcalay, Shalini Padmanabhan, W Andy Tao, Anton Iliuk (2022). Quantitative proteomics and phosphoproteomics of urinary extracellular vesicles define diagnostic and prognostic biosignatures for Parkinson’s Disease. MedRxiv.
157. Bruno Bockorny, Lakshmi Muthuswamy, Ling Huang, Marco Hadisurya, Leo Tsai, Ritu R Gill, Jesse Wei, Andrea J Bullock, Joseph Elan Grossman, Robert J Besaw, Christine Maria Lim, Supraja Narasimhan, Sofia Perea, Mandeep Sawhney, W Andy Tao, Steven Freedman, Manuel Hidalgo, Anton Iliuk, Senthil Muthuswamy (2022). Large scale proteomics of circulating extracellular vesicles to reveal novel biomarkers for pancreatic cancer. MedRxiv.
156. Xishi Zhou, Junna He, Christos N Velanis, Yiwang Zhu, Yuhan He, Kai Tang, Mingku Zhu, Lisa Graser, Erica de Leau, Xingang Wang, Lingrui Zhang, W Andy Tao, Justin Goodrich, Jian‐Kang Zhu, Cui‐Jun Zhang (2021). A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis. J. Integr. Plant Biol. 63: 1462–1474.
155. Chuan-Chih Hsu, Justine V Arrington, W Andy Tao (2021). Universal Sample Preparation Workflow for Plant Phosphoproteomic Profiling. Plant Phosphoproteomics. 2358:93-103.
154. Jie Sun, Shanying Han, Leyao Ma, Hao Zhang, Zhen Zhan, Hillary Andaluz Aguilar, Haiyang Zhang, Ke Xiao, Yanhong Gu, Zhongze Gu, W Andy Tao (2021). Synergistically Bifunctional Paramagnetic Separation Enables Efficient Isolation of Urine Extracellular Vesicles and Downstream Phosphoproteomic Analysis. ACS Appl. Mater. 13(3):3622–3630.
153. Ying Zhang, Liyuan Zhang, Anton Iliuk, W Andy Tao (2021). Profiling Glycoproteins on Functionalized Reverse Phase Protein Array. Antibody Arrays. 207-215.
152. Yali Zhang, Peipei Zhu, Xiaofeng Wu, Tianli Yuan, Zhangyao Su, Shiyin Chen, Yajun Zhou, W Andy Tao (2021). Microcystin-LR induces NLRP3 inflammasome activation via FOXO1 phosphorylation, resulting in interleukin-1β secretion and pyroptosis in hepatocytes. Toxicological Sciences. 179(1):53-69.
151. Ammara Abdullah, Saeed Salehin Akhand, Juan Sebastian Paez Paez, Wells Brown, Li Pan, Sarah Libring, Michael Badamy, Emily Dykuizen, Luis Solorio, W. Andy Tao, Michael K. Wendt (2020). Epigenetic targeting of neuropilin-1 prevents bypass signaling in drug-resistant breast cancer. Oncogene. 1-12.
150. Haiyang Zhang, Yuanyuan Deng, Xinyi Liu, Jie Sun, Leyao Ma, Yajie Ding, Zhen Zhan, Hao Zhang, Yuchen Yang, Yanhong Gu, Anton B Iliuk, Chenxi Yang, W Andy Tao (2020). Glass Fiber-Supported Hybrid Monolithic Spin Tip for Enrichment of Phosphopeptides from Urinary Extracellular Vesicles. Anal Chem. 92(21):14790-14797.
149. Yingfang Zhu, Pengcheng Huang, Pengcheng Guo, Leelyn Chong, Gaobo Yu, Xiaoli Sun, Tao Hu, Yuan Li, Chuan-Chih Hsu, Kai Tang, Yun Zhou, Chunzhao Zhao, Wei Gao, W. Andy Tao, Tesfaye Mengiste, Jian-Kang Zhu (2020). CDK8 is associated with RAP2.6 and SnRK2.6 and positively modulates abscisic acid signaling and drought response in Arabidopsis. The New Phytologist.
148. Arpita Sen, Wen-Chieh Hsieh, Claudia B. Hanna, Chuan-Chih Hsu, McKeith Pearson II, W. Andy Tao, R. Claudio Aguilar (2020). The Na+ pump Ena1 is a yeast epsin-specific cargo requiring its ubiquitylation and phosphorylation sites for internalization. Journal of Cell Science. 133: jcs245415 doi: 10.1242/jcs.245415.
147. Mayank Srivastava, Ying Zhang, Jian Chen, Devika Sirohi, Andrew Miller, Yang Zhang, Zhilu Chen, Haojie Lu, Jianqing Xu, Richard J. Kuhn, W. Andy Tao (2020). Chemical proteomics tracks virus entry and uncovers NCAM1 as Zika virus receptor. Nature Communications. 11(1):1-10.
146. Andrew G. DeMarco, Kedric L. Milholland, Amanda L. Pendleton, John J. Whitney, Peipei Zhu, Daniel T. Wesenberg, Monessha Nambiar, Antonella Pepe, Stefan Paula, Jean Chmielewski, Jennifer H. Wisecaver, W. Andy Tao, Mark C. Hall (2020). Conservation of Cdc14 phosphatase specificity in plant fungal pathogens: implications for antifungal development. Scientific Reports. 10(1):1-14.
145. Chuan-Chih Hsu, Chia-Feng Tsai, W. Andy Tao, Pengcheng Wang (2020). Phosphoproteomic Strategy for Profiling Osmotic Stress Signaling in Arabidopsis. Journal of Visualized Experiments. 160:e61489.
144. Iliuk A, Wu X, Li L, Sun J, Hadisurya M, Boris RS, Tao WA (2020). Plasma-derived EV Phosphoproteomics through Chemical Affinity Purification. J Proteome Res. 19:2563-2574.
143. Wang Q, Qin G, Cao M, Chen R, He Y, Yang L, Zeng Z, Yu Y, Gu Y, Xing W, Tao WA, Xu T (2020). A phosphorylation-based switch controls TAA1-mediated auxin biosynthesis in plants. Nat Commun. 11(1):679-688.
142. Paige N Kluz, Ryan Kolb, Qing Xie, Nicholas Borcherding, Qi Liu, Yuewan Luo, Myung-Chul Kim, Linna Wang, Yinan Zhang, Wei Li, Christopher Stipp, Katherine N Gibson-Corley, Chen Zhao, Hank H Qi, Andrew Bellizzi, Andy W Tao, Sonia Sugg, Ronald J Weigel, Daohong Zhou, Xian Shen, Weizhou Zhang (2020). Cancer cell-intrinsic function of CD177 in attenuating β-catenin signaling. Oncogene. 39(14):2877–2889.
141. Zhen Lin, Yuan Li, Zhengjing Zhang, Xiaolei Liu, Chuan-Chih Hsu, Yanyan Du, Tian Sang, Chen Zhu, Yubei Wang, Viswanathan Satheesh, Pritu Pratibha, Yang Zhao, Chun-Peng Song, W Andy Tao, Jian-Kang Zhu, Pengcheng Wang (2020). A RAF-SnRK2 kinase cascade mediates early osmotic stress signaling in higher plants. Nature Communications. 11 (1):1-10.
140. Pengcheng Wang, Chuan-Chih Hsu, Yanyan Du, Peipei Zhu, Chunzhao Zhao, Xing Fu, Chunguang Zhang, Juan Sebastian Paez, Alberto P Macho, W Andy Tao, Jian-Kang Zhu (2020). Mapping proteome-wide targets of protein kinases in plant stress responses. Proc Natl Acad Sci. 117(6):3270-3280.
139. Ying Zhang, Der-Shyang Kao, Bing Gu, Rajdeep Bomjan, Mayank Srivastava, Haojie Lu, Daoguo Zhou, Weiguo Andy Tao (2020). Inside Back Cover: Tracking Pathogen Infections by Time‐Resolved Chemical Proteomics (Angew. Chem. Int. Ed. 6/2020). Angewandte Chemie International Edition. 59(6):2523-2523.
138. Iskander M Ibrahim, Huan Wu, Roman Ezhov, Gilbert E Kayanja, Stanislav D Zakharov, Yanyan Du, Weiguo Andy Tao, Yulia Pushkar, William A Cramer, Sujith Puthiyaveetil (2020). An evolutionarily conserved iron-sulfur cluster underlies redox sensory function of the Chloroplast Sensor Kinase. Communications Biology. 3(1):1-11.
137. Hillary Andaluz, Anton B Iliuk, I-Hsuan Chen, W Andy Tao (2020). Sequential phosphoproteomics and N-glycoproteomics of plasma-derived extracellular vesicles. Nature Protocol. 15(1): 161-180.
136. Mayank Srivastava, Ying Zhang, Linna Wang, W Andy Tao (2019). Tracking Endocytosis by Mass Spectrometry. John Wiley & Sons, Inc. Chapter 9: 231-256.
135. W. Andy Tao and Ying Zhang (Editors) (2019). Mass Spectrometry-Based Chemical Proteomics. John Wiley & Sons, Inc. ISBN: 978-1-118-97020-1.
134. Wang C, Arrington J, Ratliff AC, Chen J, Horton HE, Nie Y, Yue F, Hrycyna CA, Tao WA, Kuang S (2019). Methyltransferase-like 21c methylates and stabilizes the heat shock protein HSPA8 in type I myofibers in mice. J Biol Chem. 294(37):13718-13728.
133. Wang C, Zhang B, Ratliff AC, Arrington J, Chen J, Xiong Y, Yue F, Nie Y, Hu K, Jin W, Tao WA, Hrycyna CA, Sun X, Kuang S (2019). Methyltransferase-like 21e inhibits 26S proteasome activity to facilitate hypertrophy of type IIb myofibers. FASEB J. 33(8):9672-9684.
132. Zhao C, Zayed O, Zeng F, Liu C, Zhang L, Zhu P, Hsu CC, Tuncil YE, Tao WA, Carpita NC, Zhu JK (2019). Arabinose biosynthesis is critical for salt stress tolerance in Arabidopsis. New Phytol. 224(1):274-290.
131. Arrington J, Xue L, Wang WH, Geahlen RL, Tao WA (2019). Identification of the Direct Substrates of the ABL Kinase via Kinase Assay Linked Phosphoproteomics with Multiple Drug Treatments. J Proteome Res. 18(4):1679-1690.
130. Zhao C, Zayed O, Yu Z, Jiang W, Zhu P, Hsu CC, Zhang L, Tao WA, Lozano-Durán R, Zhu JK (2018). Leucine-rich repeat extensin proteins regulate plant salt tolerance in Arabidopsis. Proc Natl Acad Sci. 115(51):13123-13128.
129. Zhang C, Du X, Tang K, Yang Z, Pan L, Zhu P, Luo J, Jiang Y, Zhang H, Wan Hasen, Wang X, Wu F, Tao WA, He XJ, Zhang H, Bressan RA, Du J, Zhu JK (2018). Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin. Nat Commun. 9(1):4547.
128. Zhang Y, Zhao C, Li L, Hsu CC, Zhu JK, Iliuk A, Tao WA (2018). High-throughput Phosphorylation Screening and Validation through Ti(IV)-Nanopolymer Functionalized Reverse Phase PhosphoProtein Array. Anal Chem. 90(17):10263-10270.
127. Wu X, Li L, Iliuk A, Tao WA (2018). Highly Efficient Phosphoproteome Capture and Analysis from Urinary Extracellular Vesicles. J Proteome Res. 17(9):3308-3316.
126. Ying Zhang, Xiaofeng Wu, W. Andy Tao (2018). Characterization and Applications of Extracellular Vesicle Proteome with Post-Translational Modifications. TrAC Trends in Analytical Chemistry. 107(2018):21-30.
125. Chuan-Chih Hsu, Yingfang Zhu, Justine V. Arrington, Juan Sebastian Paez, Pengcheng Wang, Peipei Zhu, I-Hsuan Chen, Jian-Kang Zhu, W. Andy Tao (2018). Universal plant phosphoproteomics workflow and its application to tomato signaling in response to cold stress. Mol Cell Proteomics. TIR118. 000702.
124. Zhao Y, Zhang Z, Gao J, Wang P, Hu T, Wang Z, Hou YJ, Wan Y, Liu W, Xie S, Lu T, Xue L, Liu Y, Macho AP, Tao WA, Bressan RA, Zhu JK (2018). Arabidopsis Duodecuple Mutant of PYL ABA Receptors Reveals PYL Repression of ABA-Independent SnRK2 Activity. Cell Rep. 23(11):3340-3351.
123. Sun K, You C, Wang S, Gao Z, Wu H, Tao WA, Zhu X, Sun B (2018). NIR stimulus-responsive core-shell type nanoparticles based on photothermal conversion for enhanced antitumor efficacy through chemo-photothermal therapy. Nanotechnology. 29(28):285302.
122. Chen IH, Aguilar HA, Paez Paez JS, Wu X, Pan L, Wendt MK, Iliuk AB, Zhang Y, Tao WA (2018). An analytical pipeline for discovery and verification of glycoproteins from plasma-derived extracellular vesicles as breast cancer biomarkers. Anal Chem. 90(10):6307–6313.
121. Liyuan Li, Maoxiang Qian, I-Hsuan Chen, David Finkelstein, Arzu Onar-Thomas, Melissa Johnson, Christopher Calabrese, Armita Bahrami, Dolores H López-Terrada, Jun J Yang, W Andy Tao, Liqin Zhu (2018). Acquisition of Cholangiocarcinoma Traits during Advanced Hepatocellular Carcinoma Development in Mice. Am J Pathol. 188(3):656-671.
120. Zhenlin Yang, Qi Qiu, Wei Chen, Bei Jia, Xiaomei Chen, Hongmiao Hu, Kaixuan He, Xian Deng, Sisi Li, W. Andy Tao, Xiaofeng Cao, Jiamu Du (2018). Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases. The Plant Cell. 30:167–177.
119. Pengcheng Wang, Yang Zhao, Zhongpeng Li, Chuan-Chih Hsu, Xue Liu, Liwen Fu, Yueh-Ju Hou, Yanyan Du, Shaojun Xie, Chunguang Zhang, Jinghui Gao, Minjie Cao, Xiaosan Huang, Yingfang Zhu, Kai Tang, Xingang Wang, W. Andy Tao, Yan Xiong, Jian-Kang Zhu (2018). Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response. Molecular Cell. 69(1):100–112.
118. Remi Adelaiye-Ogala, Justin Budka, Nur P Damayanti, Justine Arrington, Mary Ferris, Chuan-Chih Hsu, Sreenivasulu Chintala, Ashley Orillion, Kiersten Marie Miles, Li Shen, May Elbanna, Eric Ciamporcero, Sreevani Arisa, Piergiorgio Pettazzoni, Giulio F Draetta, Mukund Seshadri, Bradley Hancock, Milan Radovich, Janaiah Kota, Michael Buck, Heike Keilhack, Brian P McCarthy, Scott A Persohn, Paul R Territo, Yong Zang, Joseph Irudayaraj, W Andy Tao, Peter Hollenhorst, Roberto Pili (2017). EZH2 Modifies Sunitinib Resistance in Renal Cell Carcinoma by Kinome Reprogramming. Cancer research. 77(23):6651-6666.
117. Yingfang Zhu, Bangshing Wang, Kai Tang, Chuan-Chih Hsu, Shaojun Xie, Hai Du, Yuting Yang, Weiguo Andy Tao, Jian-Kang Zhu (2017). An Arabidopsis Nucleoporin NUP85 modulates plant responses to ABA and salt stress. PLoS Genet. 13(12):e1007124.
116. Lingfei Zeng, Wen-Horng Wang, Justine Arrington, Gengbao Shao, Robert L Geahlen, Chang-Deng Hu, W Andy Tao (2017). Identification of Upstream Kinases by Fluorescence Complementation Mass Spectrometry. ACS Cent. Sci. 3(10):1078–1085.
115. Cheng-Guo Duan, Xingang Wang, Lingrui Zhang, Xiansong Xiong, Zhengjing Zhang, Kai Tang, Li Pan, Chuan-Chih Hsu, Huawei Xu, W Andy Tao, Heng Zhang, Jian-Kang Zhu (2017). A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis. Proc Natl Acad Sci U S A. 114(35):E7377-E7384.
114. Woong-Hee Shin, Lingfei Zeng, Chiwook Park, W Andy Tao, Daisuke Kihara (2017). Molecular surface-based screening methods for repurposing drugs: application to find novel NAD binders in the E. Coli proteome. F1000Research. 6 (ISCB Comm J):856 (slides).
113. Yan J, Wang P, Wang B, Hsu CC, Tang K, Zhang H, Hou YJ, Zhao Y, Wang Q, Zhao C, Zhu X, Tao WA, Li J, Zhu JK (2017). The SnRK2 kinases modulate miRNA accumulation in Arabidopsis. PLoS Genet. 13(4):e1006753.
112. Hsu CC, Xue L, Arrington JV, Wang P, Paez Paez JS, Zhou Y, Zhu JK, Tao WA (2017). Estimating the Efficiency of Phosphopeptide Identification by Tandem Mass Spectrometry. J Am Soc Mass Spectrom. 28(6):1127-1135.
111. I-Hsuan Chen, Liang Xue, Chuan-Chih Hsu, Juan Sebastian Paez Paez, Li Pan, Hillary Andaluz, Michael K Wendt, Anton B Iliuk, Jian-Kang Zhu, W Andy Tao (2017). Phosphoproteins in extracellular vesicles as candidate markers for breast cancer. Proc Natl Acad Sci USA. 114(12):3175-3180.
110. Zeng L, Shin WH, Zhu X, Park SH, Park C, Tao WA, Kihara D (2017). Discovery of Nicotinamide Adenine Dinucleotide Binding Proteins in the Escherichia coli Proteome Using a Combined Energetic- and Structural-Bioinformatics-Based Approach. J Proteome Res. 16(2):470-480.
109. J.V. Arrington, C.-C. Hsu, W.A. Tao (2017). Kinase Assay-Linked Phosphoproteomics: Discovery of Direct Kinase Substrates. Methods Enzymol. 586:453-471.
108. Duan CG, Wang X, Xie S, Pan L, Miki D, Tang K, Hsu CC, Lei M, Zhong Y, Hou YJ, Wang Z, Zhang Z, Mangrauthia SK, Xu H, Zhang H, Dilkes B, Tao WA, Zhu JK (2017). A pair of transposon-derived proteins function in a histone acetyltransferase complex for active DNA demethylation. Cell Res. Cell Research. 27:226–240.
107. Justine V. Arrington, Chuan-Chih Hsu, Sarah G. Elder, W. Andy Tao (2017). Recent advances in phosphoproteomics and application to neurological diseases. Analyst. 142: 4373-4387.
106. Wang C, Wang M, Arrington J, Shan T, Yue F, Nie Y, Tao WA, Kuang S (2017). Ascl2 inhibits myogenesis by antagonizing the transcriptional activity of myogenic regulatory factors. Development. 144(2):235-247.
105. Pan L, Aguilar HA, Wang L, Iliuk A, and Tao WA (2016). Three-Dimensionally Functionalized Reverse Phase Glycoprotein Array for Cancer Biomarker Discovery and Validation. J Am Chem Soc. 138(47):15311-15314.
104. Zhang T, Xue L, Li L, Tang C, Wan Z, Wang R, Tan J, Tan Y, Han H, Tian R, Billiar TR, Tao WA, Zhang Z (2016). BNIP3 Protein Suppresses PINK1 Kinase Proteolytic Cleavage to Promote Mitophagy. J Biol Chem. 291(41):21616-21629.
103. Anton Iliuk, Li Li, Michael Melesse, Mark C Hall, W Andy Tao (2016). Cover Picture: Multiplexed Imaging of Protein Phosphorylation on Membranes Based on TiIV Functionalized Nanopolymers (ChemBioChem 10/2016). ChemBioChem. 17(10):877-877.
102. Iliuk A, Li L, Melesse M, Hall MC, Tao WA (2016). Multiplexed Imaging of Protein Phosphorylation on Membranes Based on Ti(IV) Functionalized Nanopolymers. Chembiochem. 17(10):900-3.
101. Xue L, Arrington JV, Tao WA (2016). Identification of Direct Kinase Substrates via Kinase Assay-Linked Phosphoproteomics. Methods Mol Biol. 1355:263-73.
100. Zhang HT, Zeng LF, He QY, Tao WA, Zha ZG, Hu CD (2016). The E3 ubiquitin ligase CHIP mediates ubiquitination and proteasomal degradation of PRMT5. Biochim Biophys Acta. 1863(2):335-346.
99. Duan CG, Wang X, Tang K, Zhang H, Mangrauthia SK, Lei M, Hsu CC, Hou YJ, Wang C, Li Y, Tao WA, Zhu JK (2015). MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis. PLoS Genet. 11(10):e1005559.
98. Wang L, Yang L, Pan L, Kadasala NR, Xue L, Schuster RJ, Parker LL, Wei A, Tao WA (2015). Time-Resolved Proteomic Visualization of Dendrimer Cellular Entry and Trafficking. J Am Chem Soc. 137(40):12772-5.
97. Pan L, Wang L, Hsu CC, Zhang J, Iliuk A, Tao WA (2015). Sensitive Measurement of Total Protein Phosphorylation Level in Complex Protein Samples. Analyst. 140(10): 3390-3396.
96. Iliuk AB, Tao WA (2015). Universal Non-Antibody Detection of Protein Phosphorylation Using pIMAGO. Curr Protoc Chem Biol. 7(1):17-25.
95. Lang Z, Lei M, Wang X, Tang K, Miki D, Zhang H, Mangrauthia SK, Liu W, Nie W, Ma G, Yan J, Duan CG, Hsu CC, Wang C, Tao WA, Gong Z, Zhu JK (2015). The Methyl-CpG-Binding Protein MBD7 Facilitates Active DNA Demethylation to Limit DNA Hyper-Methylation and Transcriptional Gene Silencing. Mol Cell. 57(6):971-83.
94. Gendrin C, Lembo A, Whidbey C, Burnside K, Berry J, Ngo L, Banerjee A, Xue L, Arrington J, Doran KS, Tao WA, Rajagopal L (2015). The sensor histidine kinase RgfC affects group B streptococcal virulence factor expression independent of its response regulator RgfA. Infect Immun. 83(3):1078-88.
93. Wang P, Du Y, Hou YJ, Zhao Y, Hsu CC, Yuan F, Zhu X, Tao WA, Song CP, Zhu JK (2015). Nitric oxide negatively regulates abscisic acid signaling in guard cells by S-nitrosylation of OST1. Proc Natl Acad Sci U S A. 112(2):613-8.
92. Iliuk A, Jayasundera K, Wang WH, Schluttenhofer R, Geahlen RL, Tao WA (2015). In-depth analyses of B cell signaling through tandem mass spectrometry of phosphopeptides enriched by PolyMAC. Intl J Mass Spec. 377:744-753.
91. Iliuk AB, Arrington JV, Tao WA (2014). Analytical Challenges Translating Mass Spectrometry-based Phosphoproteomics from Discovery to Clinical Applications. Electrophoresis. 35(24):3430-40.
90. Arrington JV, Xue L, Tao WA (2014). Quantitation of the phosphoproteome using the library-assisted extracted ion chromatogram (LAXIC) strategy. Methods Mol Biol. 1156:407-16.
89. Xue L, Wang P, Cao P, Zhu JK, Tao WA (2014). Identification of ERK1 Direct Substrates using Stable Isotope Labeled Kinase Assay-Linked Phosphoproteomics. Mol Cell Proteomics. 13(11):3199-210.
88. Wang L, Pan L, Tao WA (2014). Specific visualization and identification of phosphoproteome in gels. Anal Chem. 86(14):6741-7.
87. Jayasundera KB, Iliuk AB, Nguyen A, Higgins R, Geahlen RL, Tao WA (2014). Global Phosphoproteomics of Activated B Cells Using Complementary Metal Ion Functionalized Soluble Nanopolymers. Anal Chem. 86(13):6363-71.
86. Searleman AC, Iliuk AB, Collier TS, Chodosh LA, Tao WA, Bose R (2014). Tissue phosphoproteomics with PolyMAC identifies potential therapeutic targets in a transgenic mouse model of HER2 positive breast cancer. Electrophoresis. 35(24):3463-9.
85. Xue L and Tao WA (2013). Current technologies to identify protein kinase substrates in high throughput. Frontiers in Biology 8(2):261-277.
84. Tao WA, Coon J (2013). 2012 ASMS Fall Workshop: Mass Spectrometry-Based Phosphorylation Analysis and Phosphoproteomics. J Am Soc Mass Spectrom 24(3):464-5.
83. Iliuk AB, Tao WA (2013). Is phosphoproteomics ready for clinical research? Clin Chim Acta. 420:23-27.
82. Xue L, Geahlen RL, and Tao WA (2013). Identification of Direct Tyrosine Kinase Substrates Based on Protein Kinase Assay-Linked Phosphoproteomics. Mol Cell Proteomics 12(10):2969-80.
81. Walls CD, Iliuk A, Bai Y, Wang M, Tao WA, Zhang ZY (2013). Phosphatase of regenerating liver 3 (PRL3) provokes a tyrosine phosphoproteome to drive prometastatic signal transduction. Mol Cell Proteomics. 12(12):3759-77.
80. Huang R, Oh H, Arrendale A, Martin VA, Galan J, Workman EJ, Stout JR, Walczak CE, Tao WA, Borch RF, Geahlen RL (2013). Intracellular targets for a phosphotyrosine peptidomimetic include the mitotic kinesin, MCAK. Biochem Pharmacol. 86(5):597-611.
79. Wang P, Xue L, Batelli G, Lee S, Hou YJ, Van Oosten MJ, Zhang H, Tao WA, Zhu JK (2013). Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action. Proc Natl Acad Sci U S A. 110:11205-10.
78. Xue L, Wang P, Wang L, Renzi E, Radivojac P, Tang H, Arnold R, Zhu JK, and Tao WA (2013). Quantitative measurement of phosphoproteome response to osmotic stress in Arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC). Mol Cell Proteomics 12:2354-69.
77. Radu M, Rawat SJ, Beeser A, Iliuk A, Tao WA, Chernoff J (2013). ArhGAP15, a Rac-Specific GTPase Activating Protein, Plays a Dual Role in Inhibiting Small GTPase Signaling. J Biol Chem. 288:21117-25.
76. Hu L, Yang L, Lipchik AM, Geahlen RL, Parker LL, Tao WA (2013). A Quantitative Proteomics-based Competition Binding Assay to Characterize pITAM-Protein Interactions. Anal Chem. 85(10):5071-7.
75. Yu S, Huang H, Iliuk A, Wang WH, Jayasundera KB, Tao WA, Post CB, Geahlen RL (2013). Syk inhibits the activity of protein kinase a by phosphorylating tyrosine 330 of the catalytic subunit. J Biol Chem. 288(15):10870-81.
74. Puchulu-Campanella E, Chu H, Anstee DJ, Galan JA, Tao WA, Low PS (2013). Identification of the components of a glycolytic enzyme metabolon on the human red blood cell membrane. J Biol Chem 288(2):848-58.
73. Galan J, Iliuk A and Tao WA (2012). Quantitative Proteomics by Mass spectrometry, in Mass Spectrometry of Proteins and Peptides in Drug Discovery. Chen G, Gross ML and Pramanik eds., Wiley & Sons, New York.
72. Xue L, Wang W, Hu L, Iliuk A, Geahlen RL, Tao WA (2012). Sensitive kinase assay linked with phosphoproteomics for identifying kinase substrates. Proc. Natl. Acad. Sci. USA. 109(15):5615-20.
71. Pan L, Iliuk A, Yu S, Geahlen RL, Tao WA (2012). Multiplexed quantitation of protein expression and phosphorylation based on functionalized soluble nanopolymers. J Am Chem Soc 134(44): 18201-4. Research highlights by Nature Methods, 9(12), 1144.
70. Choo YS, Vogler G, Wang D, Kalvakuri S, Iliuk A, Tao WA, Bodmer R, Zhang Z (2012). Regulation of Parkin and PINK1 by Neddylation. Hum Mol Genet. 21(11):2514-23.
69. Chu H, Puchulu-Campanella E, Galan JA, Tao WA, Low PS, Hoffman JF (2012). Identification of cytoskeletal elements enclosing the ATP pools that fuel humanred blood cell membrane cation pumps. Proc Natl Acad Sci U S A 109(31):12794-9.
68. Iliuk A, Liu XS, Xue L, Liu X, Tao WA (2012). Chemical visualization of phosphoproteomes on membrane. Mol Cell Proteomics 11(9):629-39.
67. Estrella A, Sánchez EE, Galán JA, Tao WA, Guerrero B, Navarrete LF, Rodríguez-Acosta A (2011). Characterization of toxins from the broad-banded water snake Helicops angulatus (Linnaeus, 1758): isolation of a cysteine-rich secretory protein, Helicopsin. Arch Toxicol. 85(4):305-13.
66. Iliuk AB, Hu L, Tao WA (2011). Aptamer in bioanalytical applications. Anal Chem. 83(12): 4440-52.
65. Iliuk A, Jayasundera K, Schluttenhofer R, Tao WA (2011). Functionalized Soluble Nanopolymers for Phosphoproteome Analysis. Nanoproteomics: Methods and Protocols. Chapter 27. Methods in Molecular Biology. Humana Press, New York.
64. Galan J, Iliuk A and Tao WA (2011). Quantitative Proteomics by Mass spectrometry, in Mass Spectrometry of Proteins and Peptides in Drug Discovery. Chen, G. and Gross, M. eds., Wiley & Sons, New York.
63. Liu W, Iliuk A, Tao WA, Ding S (2011). Identifying protein complexes by affinity purification and mass spectrometry analysis in the rice blast fungus. Fungal Genomics. Chapter 11. Methods in Molecular Biology. 722: 157-166.
62. Iliuk A, Jayasundera K, Schluttenhofer R, Tao WA (2011). Functionalized soluble nanopolymers for phosphoproteome analysis. Methods Mol Biol. 790:277-85.
61. Hu L, Tao WA (2011). Chemical enrichment of tyrosine phosphopeptides. Chromatography (in Chinese). 29(9):869-75.
60. Burnside K, Lembo A, Harrell MI, Gurney M, Xue L, BinhTran NT, Connelly JE, Jewell KA, Schmidt BZ, de los Reyes M, Tao WA, Doran KS, Rajagopal L (2011). Serine/threonine phosphatase Stp1 mediates post-transcriptional regulation of hemolysin, autolysis, and virulence of group B Streptococcus. J Biol Chem. 286(51):44197-210.
59. Zhang JI, Tao WA, Cooks RG (2011). Facile determination of double bond position in unsaturated fatty acids and esters by low temperature plasma ionization mass spectrometry. Anal Chem 2011 83(12): 4738-44.
58. Hu L, Iliuk A, Galan J, Hans M, Tao WA (2011). Identification of Drug Targets in vitro and in Living Cells by Soluble Nanopolymer-based Proteomics. Angew. Chem. Int. Ed. 50(18): 4133-36.
57. Zhang JI, Costa AB, Tao WA, Cooks RG (2011). Direct detection of fatty acid ethyl esters using low temperature plasma (LTP) ambient ionization mass spectrometry for rapid bacterial differentiation. Analyst. 136(15):3091-7.
56. Iliuk A, Martinez J, Hall MC, Tao WA (2011). Phosphorylation assay based on multifunctionalized soluble nanopolymer. Anal. Chem. 83(7): 2767-74.
55. Galan J, Paris L, Zhang H, Min J, Adler J, Geahlen RL and Tao WA (2011). Proteomic studies of Syk-interacting proteins using a novel amines-specific isotopic tag and GFP nanotrap. J. Am. Soc Mass Spec. 22(2): 319-28.
54. Zhang JI, Talaty N, Costa AB, Yu Xia, Tao WA, Bell R, Callahan JH, Cooks RG (2011). Rapid direct lipid profiling of bacteria using desorption electrospray ionization mass spectrometry. Int. J. Mass Spec. 301: 37-44.
53. Girón ME, Estrella A, Sánchez EE, Galán J, Tao WA, Guerrero B, Salazar AM, Rodríguez-Acosta A (2011). Purification and characterization of a metalloproteinase, Porthidin-1, from the venom of Lansberg's hog-nosed pit vipers. Toxicon. 57: 608-18.
52. Tao WA (2010). Chiral recognition in the gas phase. J. Am. Chem. Soc., 132, 15457.
51. Paris LL, Hu J, Galan J, Ong SS, Ma H, Tao WA, Harrison ML, and Geahlen RL (2010). Regulation of Syk by phosphorylation on serine in the linker insert. J. Biol Chem. 285: 39844-39854.
50. Iliuk AB, Martin VA, Alicie BM, Geahlen RL and Tao WA (2010). In-depth analyses of kinase-dependent tyrosine phosphoproteomes based on metal ion functionalized soluble nanopolymers. Mol Cell Proteomics. 9: 2162-2172.
49. Ding SL, Liu W, Iliuk A, Ribot C, Vallet J, Tao A, Wang Y, Lebrun MH, Xu JR (2010). The Tig1 Histone Deacetylase Complex Regulates Infectious Growth in the Rice Blast Fungus Magnaporthe oryzae. Plant Cell 22(7): 2495-2508.
48. Sanchez EE, Lucena SE, Reyes S, Soto JG, Cantu E, Lopez-Johnston JC, Guerrero B, Salazar AM, Rodriguez-Acosta A, Galan JA, Tao WA and Perez JC (2010). Cloning, expression, and hemostatic activities of a disintegrin, r-mojastin 1, from the mohave rattlesnake (Crotalus scutulatus scutulatus). Thromb Res. 126(3): e211-19.
47. Burnside K, Lembo A, de Los Reyes M, Iliuk A, Binhtran NT, Connelly JE, Lin WJ, Schmidt BZ, Richardson AR, Fang FC, Tao WA and Rajagopal L (2010). Regulation of hemolysin expression and virulence of Staphylococcus aureus by a serine/threonine kinase and phosphatase. PLoS ONE 5: e11071.
46. Silvestroni A, Jewell KA, Lin W-J, Connelly JE, Iliuk A, Ivancic MM, Tao WA and Rajagopal L (2009). Identification of serine/threonine kinase substrates in the human pathogen group B streptococcus. J. .Proteome Res. 8(5):2563-74.
45. Iliuk A and Tao WA (2009). Quantitative phospho-proteomics based on soluble nanopolymers. Methods in Molecular Biology. 527: 117-29.
44. Salazar AM, Guerrero B, Cantu B, Cantu E, Rodríguez-Acosta A, Pérez JC, Galán JA, Tao WA, Sánchez EE (2009).Venom variation in hemostasis of the southern Pacific rattlesnake (Crotalus oreganus helleri): Isolation of hellerase. Comp Biochem Physiol C Toxicol Pharmacol. 149(3):307-16.
43. Iliuk A, Galan J, Tao WA (2009). Playing tag with quantitative proteomics. Anal Bioanal Chem. 393(2):503-13.
42. Galan JA, Guo M, Sanchez EE, Cantu E, Rodriguez -Acosta A, Perez JC, and Tao WA (2008) Quantitative analysis of snake venoms by soluble polymer-based isotope labeling. Mol. Cell. Proteomics. 7(3): 785-799.
41. Tian Q and Tao WA (2008), Proteomics in stem cells, in Chemical and Functional Genomic Approaches to Stem Cell Biology and Regenerative Medicine, Ding S eds., Wiley & Sons, New York.
40. Guo M, Galan J, Tao WA (2007). Soluble nanopolymers-based phosphoproteomics for studying protein phosphatase. Methods, 42(3), 289-297.
39. Tao WA (2007). Soluble polymers-based isotopic labeling (SoPIL): a new strategy to discover protein biomarkers? Expert Review of Proteomics, 4(5), 603-607.
38. Tao WA, Bodenmiller B, and Aebersold R (2007), Characterization of post-translational modifications: undertaking the phosphoproteome, in Method Express-Proteomics, O’Connor, D. ed., Scion Publishing, London.
37. Timmer JC, Enoksson M, Wildfang E, Zhu W, Igarashi Y, Denault J, Ma Y, Chang Y-H, Mast AE, Eroshkin A, Osterman A, Smith J, Tao WA, Salvesen GS (2007). Profiling constitutive proteolytic events in vivo. Biochem. J. 407(1):41-8.
36. Enoksson M, Li J, Ivancic MM, Timmer J, Wildfang E, Eroshkin A, Salvesen GS and Tao WA (2007). Identification of proteolytic cleavage sites by quantitative proteomics. J. Proteome Res. 6(7), 2850-2858.
35. Guo M, Galan J, Tao WA (2007). A novel quantitative proteomics reagent based on soluble nanopolymers. Chem. Commun., 1251-1253.
34. Bodenmiller B, Mueller LN, Pedrioli PGA, Pflieger D, Jünger MA, Eng JK, Aebersold R, and Tao WA (2007). An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: Application to Drosophila melanogaster Kc167 Cells. Mol. Biosys. 3, 275-286.
33. Song Y, Talaty N, Tao WA, Pan Z, Cooks RG (2007). Rapid ambient mass spectrometric profiling of intact, untreated bacteria using desorption electrospray ionization. Chem. Commun., 61-63.
32. He XC, Yin T, Grindley JC, Tian Q, Sato T, Tao WA, Dirisina R, Porter-Westpfahl KS, Hembree M, Johnson T, Wiedemann LM., Barrett TA, Hood L, Wu H, Li L (2007). PTEN-deficient intestinal stem cells initiate intestinal polyposis. Nature Genetics, 39(2), 189-198.
31. Zhou F, Galan J, Geahlen RL, Tao WA (2007). A novel quantitative proteomics strategy to study phosphorylation-dependent peptide-protein interactions. J. Proteome Res. 6, 133-40.
30. Cooks RG, Chen H, Eberlin MN, Zheng X, and Tao WA (2006). Polar acetalization and transacetalization in the gas phase: the Eberlin Reaction. Chem. Rev., 106, 188-211.
29. Tao WA, Wollscheid B, O’Brien R, Eng J, Li X, Bodenmiller B, Watts J, Hood L and Aebersold R (2005). Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and mass spectrometry. Nature Methods. 2(8): 591-598.
28. Tao WA and Aebersold R (2004). Quantitative proteomics via mass spectrometry and stable isotope dilution, in Encyclopedia of Mass Spectrometry on Biological Applications, Caprioli, R. and Gross, M. eds., Wiley & Sons, New York.
27. Tian Q, Freethman M, Tao WA, He X, Li L, Aebersold R and Hood L (2004). Proteomic analysis identifies that 14-3-3zeta interacts with beta-catenin and facilitates its activation by Akt. Proc. Natl. Acad. Sci. USA. 101: 15370-5.
26. Goo YA, Yi EC, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L and Ng WV (2004). Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol. Cell. Proteomics. 2: 506-24.
25. Tao WA and Aebersold R (2003). Advances in quantitative proteomics via stable isotope tagging and mass spectrometry. Curr. Opin. Biotechnol. 14: 110-118.
24. Tao WA and Cooks RG (2003). Chiral analysis by mass spectrometry. Anal. Chem. (A-page feature article) 75: 25A-31A.
23. Tao WA, Cooks RG and Nikolaev EN (2002). Chiral preference in the dissociation of homogeneous amino acid/metal ion clusters. Eur. J. Mass Spectrom. 8: 107-115.
22. Wu L, Tao WA and Cooks RG (2002). Ligand and metal-ion effects in metal-ion clusters used for chiral analysis of alpha-hydroxy acids by the kinetic method. Anal. Bioanal. Chem. 373(7): 618-627.
21. Tao WA, Clark RL and Cooks RG (2002). Quotient ratio method for quantitative enantiomeric determination by mass spectrometry. Anal. Chem. 74: 3783-3789.
20. Augusti DV, Carazza F, Augusti R, Tao WA, Cooks RG (2002). Quantitative chiral analysis of sugars by electrospray ionization tandem mass spectrometry using modified amino acids as chiral reference compounds. Anal Chem. 74(14):3458-62.
19. Tao WA, Wu L, Cooks RG, Wang F, Begley JA and Lampert B (2001). Rapid enantiomeric quantification of an antiviral nucleoside agent (D,L-FMAU, 2’-fluoro-5-methyl--D,L-arabinofuranosyluracil) by mass spectrometry. J. Med. Chem. 44(22): 3541-3544.
18. Tao WA, Gozzo FC and Cooks R (2001). Mass spectrometric quantitation of chiral drugs by the kinetic method. Anal. Chem. 73(8): 1692-1698.
17. Tao WA and Cooks RG (2001). Parallel reactions for enantiomeric quantification of peptides by the mass spectrometry. Angew. Chem. Intl. Ed. 40(4): 757-760; Angew. Chem. 113: 779-782.
16. Zhang D, Tao WA and Cooks RG (2001). Chiral recognition of D- and L-amino acids based on the nickel(II)-bound complexes. Intl. J. Mass Spectrom. 204(1-3): 159-169.
15. Nikolaev EN, Davankov VA, Lunine JI, Tao WA and Cooks RG (2001). Possible strategies for enantiomeric excess determination by mass spectrometry and chromatography-mass spectrometry under extraterrestrial conditions. Adv. Mass Spectrom. 15: 509-510.
14. Cooks RG, Tao WA, Nikolaev EN, Davankov VA and Lunine JI (2001). Experiments aimed at evaluation of strategies for enantiomeric excess determination by mass spectrometry under extraterrestrial conditions. Adv. Mass Spectrom. 15: 349-350.
13. Tao WA and Gilpin RK (2001). Liquid chromatographic studies of the effect of phosphate on the binding properties of silica-immobilized bovine serum albumin. J. Chrom. Sci. 39(5): 205-212.
12. Zheng X, Tao WA and Cooks RG (2001). Eberlin reaction of arylsefonium with cyclic acetals and ketals. J. Chem. Soc. Perkin Trans. 2 3: 350-355.
11. Lee Y, Jo S, Tao WA and Cooks RG (2001). Metal-assisted esterification of Fe(II)-glutaric acid complex in gas phase. Rapid Comm. Mass Spectrom. 15(7): 484-488.
10. Zheng X, Tao WA and Cooks RG (2001). Gas-phase SN2 reactivity of dicoordinated borinium cations using pentaquadrupole mass spectrometry. J. Amer. Soc. Mass Spectrom. 12(8): 948-955.
9. Tao WA, Wu L and Cooks RG (2001). Differentiation and quantitation of isomeric dipeptides by low-energy dissociation of copper(II)-bound complexes. J. Am. Soc. Mass Spectrom. 12(5): 490-496.
8. Tao WA, Zheng X and Cooks RG (2000). Synthesis of B,N,O-containing heterocycles via reaction of an aminoborinium ion with cyclic acetals and ketals. J. Mass Spectrom. 35(10):1215-1221.
7. Tao WA, Wu L and Cooks RG (2000). Rapid enantiomeric determination of -hydroxy acids by electrospray ionization tandem mass spectrometry. Chem. Comm. 20: 2023-2024.
6. Tao WA, Zhang D, Cooks RG and Nikolaev EN (2000). Copper(II)-assisted enantiomeric analysis of D,L-amino acids: chiral recognition and quantification in gas phase. J. Am. Chem. Soc. 122: 10598-10609.
5. Tao WA, Wang F, Denault JD and Cooks RG (1999). Synthesis of silicon heterocycles via gas-phase silylium ion reactions with cyclic acetals and ketals. J. Chem. Soc. Perkin Trans. 2 11: 2325-2332.
4. Wang F, Tao WA, Gozzo FC, Eberlin MN and Cooks RG (1999). Synthesis of B- and P-heterocycles by reaction of cyclic acetals and ketals with borinium and phosphonium ions. J. Org. Chem. 64(9): 3213-3223.
3. Wang F, Ma SG, Tao WA and Cooks RG (1999). Replacement of C-O by P-O in cyclic acetals and ketals. Angew. Chem. Intl. Ed. 38(3): 386-389; Angew. Chem. 111: 399-401.
2. Tao WA, Zhang D, Wang F, Thomas PD and Cooks RG (1999). Kinetic Resolution of d,l-Amino Acids Based on Gas-Phase Dissociation of Copper(II) Complexes. Anal. Chem. 71(19): 4427-4429.
1. Xu YM, Tao W, Yuan YF and Wang JT (1997). Syntheses and characterization of pentacoordinate organo-tin (IV) complexes (III) - Fe-Sn-Fe containing trinuclearorganometallic complexes. Chem. J. Chin. Univ. 18(3): 404-408.